Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs12479656 chr20:29509998 G/A 2.49E-13 118 38.23 50.1 6 KM Plot
THYM rs12479665 chr20:29510156 G/A 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs12480867 chr20:29513047 C/T 2.49E-13 118 38.23 50.1 6 KM Plot
THYM rs12487052 chr3:118942475 C/T 5.55E-13 119 46.27 30.13 3.83 KM Plot
THYM rs12492305 chr3:118953691 C/T 6.75E-13 118 46.07 31.28 3.83 KM Plot
THYM rs12508137 chr4:1644028 G/A 9.3E-5 114 40.67 39.95 32.7 KM Plot
THYM rs12508672 chr4:6287965 G/A 5.76E-7 114 25.83 40.78 50.13 KM Plot
THYM rs12519213 chr5:149867885 C/A 1.5E-8 118 41.22 35.13 12.63 KM Plot
THYM rs12519820 chr5:149868277 G/A 1.5E-8 118 41.22 35.13 12.63 KM Plot
THYM rs12520805 chr5:149864390 G/A 1.77E-8 117 41.77 35.13 12.63 KM Plot
THYM rs12524017 chr6:72859731 G/A 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs12525767 chr6:85132102 A/C 0.000199 118 36.4 49.75 53.63 KM Plot
THYM rs1252639 chr2:30739241 G/C 4.49E-7 118 38.58 45.87 13.23 KM Plot
THYM rs1252641 chr2:30739530 T/C 4.49E-7 118 38.58 45.87 13.23 KM Plot
THYM rs1252643 chr2:30739772 A/G 4.49E-7 118 38.58 45.87 13.23 KM Plot